PlotRF.VIP: Plot variable importance ranked by MeanDecreaseAccuracy

In xia-lab/MicrobiomeAnalystR: MicrobiomeAnalystR - A comprehensive R package for statistical, visual, and functional analysis of the microbiome.

Plot variable importance ranked by MeanDecreaseAccuracy

Description

This functions plot variable importance ranked by MeanDecreaseAccuracy from the random forest analysis.

Usage

PlotRF.VIP(mbSetObj, feature, imgName, format = "png", dpi = 72, width = NA)

Arguments

mbSetObj	Input the name of the mbSetObj.
feature	Numeric, input the number of important features. This is more for RF.VIP to make the sizes of the plot consistent.
imgName	Character, input the name of the plot.
format	Character, by default the plot is .png format.
dpi	The dots per inch. Numeric, by default it is set to 72.
width	Width of the plot. Numeric, by default it is set to NA.

Author(s)

Jeff Xia [e-mail] McGill University, Canada License: GNU GPL (>= 2)

xia-lab/MicrobiomeAnalystR documentation built on April 17, 2024, 7:45 p.m.