PlotRarefactionCurve: Function to create rarefraction curves of microbiome data

In xia-lab/MicrobiomeAnalystR: MicrobiomeAnalystR - A comprehensive R package for statistical, visual, and functional analysis of the microbiome.

Function to create rarefraction curves of microbiome data

Description

This functions plots rarefraction curves.

Usage

PlotRarefactionCurve(
  mbSetObj,
  data.src,
  linecolor,
  linetype,
  facet,
  step = 5,
  imgName,
  format = "png",
  dpi = 72,
  interactive = FALSE
)

Arguments

mbSetObj	Input the name of the mbSetObj.
data.src	Character, use "orig" to use the original data or "proc" to use the processed data.
linecolor	Character, input the metadata you wish to group the sample line colors.
linetype	Character, input the metadata you wish to group the sample line types.
facet	Character, input the metadata you wish to group the samples.
step	Numeric, input the step number. Default is set to 5.
imgName	Character, input the name of the plot to be saved.
format	Character, input the type of plot to be saved. Default is set to png.
dpi	Numeric, input the dpi for the plot to be saved. Default is set to 72.
interactive	Boolean, if set to TRUE, saves the plot as an interactive html plot.

Author(s)

Jeff Xia [e-mail] McGill University, Canada License: GNU GPL (>= 2)

xia-lab/MicrobiomeAnalystR documentation built on April 17, 2024, 7:45 p.m.