PlotSamplePieGraph: Main function to plot sample-wise pie graphs of microbiome...
In xia-lab/MicrobiomeAnalystR: MicrobiomeAnalystR - A comprehensive R package for statistical, visual, and functional analysis of the microbiome.
PlotSamplePieGraph R Documentation
Main function to plot sample-wise pie graphs of microbiome data.
Description
This functions plots sample-wise pie graphs of microbiome data.
Usage
PlotSamplePieGraph(
mbSetObj,
taxalvl,
smplnm,
feat_cnt,
toptaxapie,
pietoptaxaopt
)
Arguments
mbSetObj
Input the name of the mbSetObj.
taxalvl
Character, input the taxonomic level to perform
classification. For instance, "Genus" to use the Genus level.
feat_cnt
Set the minimum feature count that is used to "bin"
together small taxa.
Author(s)
Jeff Xia jeff.xia@mcgill.ca
McGill University, Canada
License: GNU GPL (>= 2)
xia-lab/MicrobiomeAnalystR documentation built on April 17, 2024, 7:45 p.m.
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| PlotSamplePieGraph | R Documentation |
Main function to plot sample-wise pie graphs of microbiome data.
Description
This functions plots sample-wise pie graphs of microbiome data.
Usage
PlotSamplePieGraph(
mbSetObj,
taxalvl,
smplnm,
feat_cnt,
toptaxapie,
pietoptaxaopt
)
Arguments
mbSetObj |
Input the name of the mbSetObj. |
taxalvl |
Character, input the taxonomic level to perform classification. For instance, "Genus" to use the Genus level. |
feat_cnt |
Set the minimum feature count that is used to "bin" together small taxa. |
Author(s)
Jeff Xia jeff.xia@mcgill.ca McGill University, Canada License: GNU GPL (>= 2)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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