PlotSampleTaxaAundanceBar: Function to create bar plots of selected taxa level.

In xia-lab/MicrobiomeAnalystR: MicrobiomeAnalystR - A comprehensive R package for statistical, visual, and functional analysis of the microbiome.

Function to create bar plots of selected taxa level.

Description

This functions creates bar plots of a selected taxa level.

Usage

PlotSampleTaxaAundanceBar(
  mbSetObj,
  barplotName,
  taxalvl,
  samplnm,
  imgOpt,
  feat_cnt,
  toptaxa,
  abunTopTaxaOpt,
  appendnm,
  format = "png",
  dpi = 72
)

Arguments

mbSetObj	Input the name of the mbSetObj.
barplotName	Character, input the name of the bar plot.
taxalvl	Character, input the taxonomic level to perform classification. For instance, "Genus" to use the Genus level.
format	Character, input the preferred format of the plot. By default it is set to "png".
dpi	Numeric, input the dots per inch. By default it is set to 72.

Author(s)

Jeff Xia [e-mail] McGill University, Canada License: GNU GPL (>= 2)

xia-lab/MicrobiomeAnalystR documentation built on April 17, 2024, 7:45 p.m.