Read16SAbundDataMeta: Function to read 16S Abundance data in meta-analysis module
In xia-lab/MicrobiomeAnalystR: MicrobiomeAnalystR - A comprehensive R package for statistical, visual, and functional analysis of the microbiome.

Read16SAbundDataMeta

R Documentation

Function to read 16S Abundance data in meta-analysis module

This is the main function read in the 16S data into the mbSetObj.

Read16SAbundDataMeta(
  mbSetObj,
  dataName,
  format,
  taxa_type,
  ismetafile,
  is.normalized = F
)

`mbSetObj`	Input the name of the mbSetObj.
`dataName`	File name of selected dataset
`format`	File type, only supports ".txt"
`taxa_type`	Taxonomy type (i.e.
`ismetafile`	Whether meta-data is given (for BIOM format only)
`is.normalized`	Specify whether uploaded data is normalized or raw counts

Jeff Xia jeff.xia@mcgill.ca McGill University, Canada License: GNU GPL (>= 2)

xia-lab/MicrobiomeAnalystR documentation built on April 17, 2024, 7:45 p.m.

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