SanityCheckData: Main function to sanity check on uploaded microbiome data
In xia-lab/MicrobiomeAnalystR: MicrobiomeAnalystR - A comprehensive R package for statistical, visual, and functional analysis of the microbiome.
SanityCheckData R Documentation
Main function to sanity check on uploaded microbiome data
Description
This function performs a sanity check on the uploaded
user data. It checks the grouping of samples, if a phylogenetic tree
was uploaded.
Usage
SanityCheckData(mbSetObj, filetype, disableFilter = FALSE)
Arguments
mbSetObj
Input the name of the mbSetObj.
filetype
Character, "biom" if the uploaded data
was .biom format, "mothur" if mothur format, or "txt" if
as .txt or .csv format.
disableFilter
Boolean. Set to TRUE to bypass the hard-coded filter
to remove features occuring in <2 samples.
Author(s)
Jeff Xia jeff.xia@mcgill.ca
McGill University, Canada
License: GNU GPL (>= 2)
xia-lab/MicrobiomeAnalystR documentation built on Sept. 7, 2024, 1:26 p.m.
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| SanityCheckData | R Documentation |
Main function to sanity check on uploaded microbiome data
Description
This function performs a sanity check on the uploaded user data. It checks the grouping of samples, if a phylogenetic tree was uploaded.
Usage
SanityCheckData(mbSetObj, filetype, disableFilter = FALSE)
Arguments
mbSetObj |
Input the name of the mbSetObj. |
filetype |
Character, "biom" if the uploaded data was .biom format, "mothur" if mothur format, or "txt" if as .txt or .csv format. |
disableFilter |
Boolean. Set to TRUE to bypass the hard-coded filter to remove features occuring in <2 samples. |
Author(s)
Jeff Xia jeff.xia@mcgill.ca McGill University, Canada License: GNU GPL (>= 2)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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