DAISIE_convert_to_classic_plot: Prepare input for DAISIE_stt

In xieshu95/Trait_dependent_TraiSIE: Dynamical Assembly of Islands by Speciation, Immigration and Extinction

Description

Prepare input for DAISIE_stt

Usage

DAISIE_convert_to_classic_plot(simulation_outputs, Tpars = NULL)

Arguments

simulation_outputs

A list with matrices? of simulation produced by DAISIE_sim.

Tpars

A named list containing diversification rates considering two trait states: [1]:A numeric with the per capita transition rate with state1 [2]:A numeric with the per capita immigration rate with state2 [3]:A numeric with the per capita extinction rate with state2 [4]:A numeric with the per capita anagenesis rate with state2 [5]:A numeric with the per capita cladogenesis rate with state2 [6]:A numeric with the per capita transition rate with state2 [7]:A carrying capacity with trait state 2 on mainland [8]:A numeric with the number of species with trait state 2 on mainland

Value

a list with wrangled data to be used for plotting STT plots with DAISIE_plot_stt

See Also

DAISIE_plot_stt, DAISIE_plot_sims

Examples

utils::data("islands_1type_1000reps", package = "DAISIE")
simulation_outuputs <- DAISIE:::DAISIE_convert_to_classic_plot(
islands_1type_1000reps
)

xieshu95/Trait_dependent_TraiSIE documentation built on Nov. 22, 2019, 7:51 a.m.