DAISIE_format_CS: Formats clade-specific simulation output into standard DAISIE...

In xieshu95/Trait_dependent_TraiSIE: Dynamical Assembly of Islands by Speciation, Immigration and Extinction

Description

Formats clade-specific simulation output into standard DAISIE list output

Usage

DAISIE_format_CS(island_replicates, time, M, sample_freq,
  start_midway = FALSE, verbose = TRUE, Tpars = NULL)

Arguments

island_replicates	Int stating number of replicates.
time	Numeric double with total time of simulation.
M	Int stating number of mainland species.
sample_freq	Int stating how often results are sampled for plotting
start_midway	Logical stating if simulation starts at t > 0.
verbose	Logical controling if progress is printed to console.
Tpars	A named list containing diversification rates considering two trait states: [1]:A numeric with the per capita transition rate with state1 [2]:A numeric with the per capita immigration rate with state2 [3]:A numeric with the per capita extinction rate with state2 [4]:A numeric with the per capita anagenesis rate with state2 [5]:A numeric with the per capita cladogenesis rate with state2 [6]:A numeric with the per capita transition rate with state2 [7]:A carrying capacity with trait state 2 on mainland [8]:A numeric with the number of species with trait state 2 on mainland

Value

List with CS DAISIE simulation output

xieshu95/Trait_dependent_TraiSIE documentation built on Nov. 22, 2019, 7:51 a.m.