API for xieshu95/Trait_dependent_TraiSIE
Dynamical Assembly of Islands by Speciation, Immigration and Extinction

Global functions
Add_brt_table Source code
Biwa_datalist Man page
DAISIE_ExpEIN Man page Source code
DAISIE_KLdist Source code
DAISIE_ML Man page Source code
DAISIE_ML1 Source code
DAISIE_ML2 Source code
DAISIE_ML3 Source code
DAISIE_ML_CS Man page
DAISIE_ML_IW Man page Source code
DAISIE_MW_ML Man page Source code
DAISIE_MW_loglik_choosepar Source code
DAISIE_ONEcolonist Man page Source code
DAISIE_SR_ML Man page Source code
DAISIE_SR_ML_CS Man page
DAISIE_SR_loglik Source code
DAISIE_SR_loglik_CS Man page
DAISIE_SR_loglik_all Man page Source code
DAISIE_SR_loglik_all_choosepar Source code
DAISIE_SR_sim Man page Source code
DAISIE_SR_sim_core Source code
DAISIE_calc_clade_ana_rate Man page Source code
DAISIE_calc_clade_clado_rate Man page Source code
DAISIE_calc_clade_ext_rate Man page Source code
DAISIE_calc_clade_imm_rate Man page Source code
DAISIE_calc_sumstats_pcrates Man page Source code
DAISIE_convert_to_classic_plot Man page Source code
DAISIE_convertprobdist Man page Source code
DAISIE_create_island Man page Source code
DAISIE_create_island_trait Source code
DAISIE_dataprep Man page Source code
DAISIE_eq Source code
DAISIE_extract_stt_median Man page Source code
DAISIE_format_CS Man page Source code
DAISIE_format_CS_trait Source code
DAISIE_format_IW Man page Source code
DAISIE_format_IW_trait Source code
DAISIE_get_brts_mya Man page Source code
DAISIE_integrate Source code
DAISIE_integrate_const Source code
DAISIE_integrate_time Source code
DAISIE_loglik Source code
DAISIE_loglik_CS Man page
DAISIE_loglik_CS_choice Source code
DAISIE_loglik_IW Man page Source code
DAISIE_loglik_IW0 Source code
DAISIE_loglik_IW0_choosepar Source code
DAISIE_loglik_IW_M1 Source code
DAISIE_loglik_IW_choosepar Source code
DAISIE_loglik_all Man page Source code
DAISIE_loglik_all_choosepar Source code
DAISIE_loglik_all_choosepar2 Source code
DAISIE_loglik_all_choosepar3 Source code
DAISIE_loglik_high_lambda Source code
DAISIE_loglik_rhs Source code
DAISIE_loglik_rhs2 Source code
DAISIE_loglik_rhs_IW Source code
DAISIE_loglik_rhs_IW0 Source code
DAISIE_loglik_rhs_precomp Source code
DAISIE_loglik_rhs_time Source code
DAISIE_loglik_rhs_time2 Source code
DAISIE_make_archipelago Source code
DAISIE_make_global Source code
DAISIE_margprobdist Man page Source code
DAISIE_numcol Man page Source code
DAISIE_numcol_dist Source code
DAISIE_ode_FORTRAN Source code
DAISIE_plot_age_diversity Man page Source code
DAISIE_plot_area Man page Source code
DAISIE_plot_cladogenesis Man page Source code
DAISIE_plot_comparison_stts Man page Source code
DAISIE_plot_extinction Man page Source code
DAISIE_plot_immigration Man page Source code
DAISIE_plot_island Man page
DAISIE_plot_pc_rates Man page Source code
DAISIE_plot_sims Man page Source code
DAISIE_plot_stt Man page Source code
DAISIE_probdist Man page Source code
DAISIE_probdist_rhs Source code
DAISIE_sample_event Man page Source code
DAISIE_sim Man page Source code
DAISIE_sim_core Man page Source code
DAISIE_sim_core_1_4 Man page Source code
DAISIE_sim_core_checked Man page Source code
DAISIE_sim_core_checked_1_4 Man page Source code
DAISIE_sim_core_trait Source code
DAISIE_sim_min_type2 Source code
DAISIE_sim_update_state Man page Source code
DAISIE_sim_update_state_trait Source code
DAISIE_sim_with_mainland Man page Source code
DAISIE_sim_with_ontogeny Man page Source code
DAISIE_tutorial Man page Source code
Galapagos_datalist Man page
Galapagos_datalist_2types Man page
Galapagos_datatable Man page
ML_CS_store_params Source code
Macaronesia_datalist Man page
antidiagSums Source code
are_area_params Man page Source code
are_rates Man page Source code Source code
are_trait_state_params Man page Source code
bin2dec Source code
calcMN Source code
calc_next_timeval Man page Source code
checkprobs Source code
checkprobs2 Source code
compare_diff Man page Source code
compare_diff2 Source code
countimmi Source code
countspecies Man page Source code
countspeciestype1 Source code
countstac Source code
counttype1 Source code
create_area_params Man page Source code
create_daisie_params Man page Source code
create_rates Man page Source code
create_test_daisie_params Man page Source code
create_test_simulation_outputs Man page Source code
create_test_trait_state_params Source code
create_trait_state_params Man page Source code
dec2bin Source code
dec2binmat Source code
default_params_doc Man page Source code
divdepvec Source code
divdepvec1 Source code
divdepvec_time Source code
divdepvecproc Source code
f_sigmoidal_neg Source code
f_sigmoidal_pos Source code
fconstr13 Source code
fconstr15 Source code
get_ana_rate Man page Source code
get_clado_rate Man page Source code
get_ext_rate Man page Source code
get_immig_rate Man page Source code
get_t_hor Man page Source code
get_trans_rate Man page Source code
is.odd Man page Source code
is_island_ontogeny_input Man page Source code
is_island_ontogeny_runtime Man page Source code
is_numeric_list Man page Source code
is_simulation_outputs Man page Source code
island_area Man page Source code
island_area_vector Man page Source code
islands_10reps_RAW Man page
islands_1type_1000reps Man page
islands_2types_1000reps Man page
islands_sim_MLE Source code
kimat Source code
kmini Source code
kmini0 Source code
nndivdep Source code
nndivdep0 Source code
odeproc Source code
order_pars1 Source code
par_shift Source code
quantiles Source code
selectrows Source code
shift_before_certain_brts Source code
sim_with_estimated_pars Source code
translate_island_ontogeny Man page Source code
update_rates Man page Source code
update_rates_trait Source code
xieshu95/Trait_dependent_TraiSIE documentation built on Nov. 22, 2019, 7:51 a.m.