get_immig_rate: Calculate immigration rate

In xieshu95/Trait_dependent_TraiSIE: Dynamical Assembly of Islands by Speciation, Immigration and Extinction

Description

Internal function. Calculates the immigration rate given the current number of species in the system, the carrying capacity

Usage

get_immig_rate(timeval, totaltime, gam, Apars, Tpars = NULL,
  island_ontogeny, island_spec, K, mainland_n)

Arguments

timeval	current time of simulation
totaltime	total time of simulation
gam	per capita immigration rate
Apars	a named list containing area parameters as created by create_area_params: [1]: maximum area [2]: value from 0 to 1 indicating where in the island's history the peak area is achieved [3]: sharpness of peak [4]: total island age
Tpars	A named list containing diversification rates considering two trait states: [1]:A numeric with the per capita transition rate with state1 [2]:A numeric with the per capita immigration rate with state2 [3]:A numeric with the per capita extinction rate with state2 [4]:A numeric with the per capita anagenesis rate with state2 [5]:A numeric with the per capita cladogenesis rate with state2 [6]:A numeric with the per capita transition rate with state2 [7]:A carrying capacity with trait state 2 on mainland [8]:A numeric with the number of species with trait state 2 on mainland
island_ontogeny	a string describing the type of island ontogeny. Can be NULL, "beta" for a beta function describing area through time, or "linear" for a linear function
island_spec	matrix with current state of system
K	carrying capacity
mainland_n	total number of species present in the mainland

Author(s)

Pedro Neves

References

Valente, Luis M., Rampal S. Etienne, and Albert B. Phillimore. "The effects of island ontogeny on species diversity and phylogeny." Proceedings of the Royal Society of London B: Biological Sciences 281.1784 (2014): 20133227.

See Also

Does the same as DAISIE_calc_clade_imm_rate

Other rates calculation: DAISIE_plot_area, get_ana_rate, get_ext_rate, get_t_hor, get_trans_rate, island_area_vector, island_area, update_rates

xieshu95/Trait_dependent_TraiSIE documentation built on Nov. 22, 2019, 7:51 a.m.