DAISIE_sample_event: Samples what event to happen next

In xieshu95/Trait_dependent_TraiSIE: Dynamical Assembly of Islands by Speciation, Immigration and Extinction

Description

Samples what event to happen next

Usage

DAISIE_sample_event(rates, island_ontogeny = NULL, Tpars = NULL)

Arguments

rates	numeric list with probability rates for each event. In the ontogeny case it also contains the maximum possible probability for the event at each timestep.
island_ontogeny	a string describing the type of island ontogeny. Can be NULL, "beta" for a beta function describing area through time, or "linear" for a linear function
Tpars	A named list containing diversification rates considering two trait states: [1]:A numeric with the per capita transition rate with state1 [2]:A numeric with the per capita immigration rate with state2 [3]:A numeric with the per capita extinction rate with state2 [4]:A numeric with the per capita anagenesis rate with state2 [5]:A numeric with the per capita cladogenesis rate with state2 [6]:A numeric with the per capita transition rate with state2 [7]:A carrying capacity with trait state 2 on mainland [8]:A numeric with the number of species with trait state 2 on mainland

Value

numeric indicating what event will happen, or a supposed event that would happen in some timesteps of the ontogeny algorithm.

• [1]: immigration event

• [2]: extinction event

• [3]: cladogenesis event

• [4]: anagenesis event

• [5]: proposed extinction that will not happen or transition event

• [6]: proposed immigration that will not happen or immigration event with state2

• [7]: proposed cladogenesis that will not happen or extinction event with state2

• [8]: cladogenesis event with state2

• [9]: anagenesis event with state2

• [10]: transition event with state2

Author(s)

Pedro Neves

xieshu95/Trait_dependent_TraiSIE documentation built on Nov. 22, 2019, 7:51 a.m.