translate_island_ontogeny: Translate user-friendly ontogeny codes to numerics
In xieshu95/Trait_dependent_TraiSIE: Dynamical Assembly of Islands by Speciation, Immigration and Extinction
Description
Usage
Arguments
Value
References
See Also
Examples
Description
This function simulates islands with given cladogenesis, extinction, Kprime,
immigration and anagenesis parameters. If a single parameter set is provided
(5 parameters) it simulates islands where all species have the same
macro-evolutionary process. If two paramater sets (10 parameters) are
provided, it simulates islands where two different macro-evolutionary
processes operate, one applying to type 1 species and other to type 2
species.
Returns R list object that contains the simulated islands.
Usage
1
translate_island_ontogeny(island_ontogeny)
Arguments
island_ontogeny
a string describing the type of island ontogeny. Can be "const",
"beta" for a beta function describing area through time,
or "linear" for a linear function
Value
Numeric, 0 for null-ontogeny, 1 for linear decrease and
2 for beta function
References
Valente, L.M., A.B. Phillimore and R.S. Etienne (2015).
Equilibrium and non-equilibrium dynamics simultaneously operate in the
Galapagos islands. Ecology Letters 18: 844-852.
See Also
DAISIE_format_CS DAISIE_plot_sims
Examples
1
translate_island_ontogeny("const")
xieshu95/Trait_dependent_TraiSIE documentation built on Nov. 22, 2019, 7:51 a.m.
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Description Usage Arguments Value References See Also Examples
Description
This function simulates islands with given cladogenesis, extinction, Kprime, immigration and anagenesis parameters. If a single parameter set is provided (5 parameters) it simulates islands where all species have the same macro-evolutionary process. If two paramater sets (10 parameters) are provided, it simulates islands where two different macro-evolutionary processes operate, one applying to type 1 species and other to type 2 species.
Returns R list object that contains the simulated islands.
Usage
1 | translate_island_ontogeny(island_ontogeny)
|
Arguments
island_ontogeny |
a string describing the type of island ontogeny. Can be |
Value
Numeric, 0 for null-ontogeny, 1 for linear decrease and 2 for beta function
References
Valente, L.M., A.B. Phillimore and R.S. Etienne (2015). Equilibrium and non-equilibrium dynamics simultaneously operate in the Galapagos islands. Ecology Letters 18: 844-852.
See Also
DAISIE_format_CS DAISIE_plot_sims
Examples
1 | translate_island_ontogeny("const")
|
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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