DAISIE_sim_update_state: Updates state of island given sampled event

In xieshu95/Trait_dependent_TraiSIE: Dynamical Assembly of Islands by Speciation, Immigration and Extinction

Description

Makes the event happen by updating island species matrix and species IDs. What event happens is determined by the sampling in the algorithm.

Usage

DAISIE_sim_update_state(timeval, totaltime, possible_event, maxspecID,
  mainland_spec, island_spec, stt_table, Tpars)

Arguments

timeval	current time of simulation
totaltime	simulated amount of time
possible_event	numeric indicating what event will happen.
maxspecID	current species IDs
mainland_spec	number of mainland species
island_spec	A matrix with species on island (state of system at each time point)
stt_table	A species-through-time table
Tpars	A named list containing diversification rates considering two trait states: [1]:A numeric with the per capita transition rate with state1 [2]:A numeric with the per capita immigration rate with state2 [3]:A numeric with the per capita extinction rate with state2 [4]:A numeric with the per capita anagenesis rate with state2 [5]:A numeric with the per capita cladogenesis rate with state2 [6]:A numeric with the per capita transition rate with state2 [7]:A carrying capacity with trait state 2 on mainland [8]:A numeric with the number of species with trait state 2 on mainland

See Also

DAISIE_sim_core

xieshu95/Trait_dependent_TraiSIE documentation built on Nov. 22, 2019, 7:51 a.m.