Man pages for xinchoubiology/Rcppsva
Rcpp Integration Surrogate Variable Analysis
| arma_eigen | arma_eigen |
| average_linkage | average_linkage |
| Beta.NA | Beta.NA |
| beta_regress | beta_regress |
| bootstrap.fit | bootstrap.fit |
| bootstrap_regress | bootstrap_regress |
| bumphuntingEngine | bumphuntingEngine |
| bumps-class | Class "bumps" The class contains information of methyaltion... |
| clique_merge | clique_merge |
| clusterMaker | clusterMaker |
| ComBat | Adjust for batch effects using an empirical Bayesian or... |
| combine.pvalue | combine.pvalue |
| complete_linkage | complete_linkage |
| corrclusterMaker | corrclusterMaker |
| Dbpmerge | Dbpmerge |
| dendro.data | dendro.data |
| dendrogram | dendrogram |
| distance_kinds | distance_kinds |
| distributeRef | distributeRef |
| Eigenbeta | Eigenbeta |
| estDimRMT | estDimRMT |
| gapStat | gapStat |
| get450Ksheet | get450Ksheet |
| get450Kurl | get450Kurl |
| get450Kzip | get450Kzip |
| get.bumps-methods | get.bumps method |
| getTCGAssemble | getTCGAssemble |
| HClust | HClust |
| hclust_from_data | hclust_from_data |
| Index.NA | Index.NA |
| int_eprior | int_eprior |
| int.eprior | Monte Carlo integration functions |
| isvaFn | isvaFn |
| linkage_kinds | linkage_kinds |
| List2Index | List2Index |
| memberDend | memberDend |
| memberLimit | memberLimit |
| midDend | midDend |
| mlm.fit | mlm.fit |
| mlm.tstat | mlm.tstat |
| moduleSearch | moduleSearch |
| optimModule | optimModule |
| plot | plot correlation matrix by ggplot |
| preProcess450K | preProcess450K |
| preProcessDMR | preProcessDMR |
| out.R is used to print/plot data object in Rcppsva to... | |
| pvalue | pvalue |
| rankm | rankm |
| Rcppsva | Accelerate version of sva packaga on Bioconductor |
| regionSeeker | regionSeeker |
| segmentsCluster | segmentsCluster |
| segmentsMaker | segmentsMaker |
| show-methods | show |
| single_linkage | single_linkage |
| smoother | smoother |
| stouffer_liptak.combp | stouffer_liptak.combp |
| svaReg | svaReg |
| theme_dendro | theme_dendro |
| wilcox.fit | wilcox.fit |
| zscore.combp | zscore.combp |
