segmentsMaker: segmentsMaker

In xinchoubiology/Rcppsva: Rcpp Integration Surrogate Variable Analysis

Description

segment vectors into positive, null and negative

Usage

segmentsMaker(cluster, beta, cutoff, chr, pos, permbeta)

Arguments

cluster	vector of probes clusters
beta	beta value for probes
cutoff	cutoff value for positive & negative value; <= cutoff[1] : hypo >= cutoff[4] : hyper (cutoff[2], cutoff[3]) : null
chr	chromosome vector
pos	position vector
permbeta	null hypothesis distribution

Details

bumphunting kernel; and we can use comb-p method in segmentMaker.

Value

cluster list and each cluster contains 3 list 'hyper'| '+' 'hypo' | '-' 'null' | '0'

xinchoubiology/Rcppsva documentation built on May 4, 2019, 1:06 p.m.