Files in xinchoubiology/Rcppsva
Rcpp Integration Surrogate Variable Analysis
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/AllClasses.R
R/AllGenerics.R
R/ComBat.R
R/RcppExports.R
R/Rcppsva-package.R
R/bumphunter.R
R/clustering.R
R/combp.R
R/dendrogram.R
R/get450K.R
R/iSVA.R
R/misc.R
R/optimization-methods.R
R/plot-methods.R
R/print-methods.R
R/smooth.R
R/zzz.R
README.md
Rcppsva.Rproj
cleanup
demo/example_pipe.R
demo/serverpip_I.R
demo/serverpip_II.R
history.md
inst/extdata/DirectoryTraverseResult.rda
inst/extdata/LICENSE.txt
inst/extdata/Module_A.r
inst/extdata/Module_B.r
inst/extdata/SupportingFiles/Hg18GenePosition.txt
inst/extdata/SupportingFiles/Hg19GenePosition.txt
inst/extdata/SupportingFiles/MethylationChipAnnotation.rda
inst/extdata/SupportingFiles/TCGASampleType.txt
inst/include/RcppsvaEigenArrayPlugin.h
inst/include/RcppsvaEigenMatrixPlugin.h
inst/include/RcppsvaEigenSugar.h
inst/include/RcppsvaForward.h
inst/include/RcppsvaHClust.h
inst/include/RcppsvaHClust/algorithm.h
inst/include/RcppsvaHClust/cluster.h
inst/include/RcppsvaHClust/hclust.h
inst/include/RcppsvaHClust/method.h
inst/include/RcppsvaHClust/util.h
man/Beta.NA.Rd
man/ComBat.Rd
man/Dbpmerge.Rd
man/Eigenbeta.Rd
man/HClust.Rd
man/Index.NA.Rd
man/List2Index.Rd
man/Rcppsva.Rd
man/arma_eigen.Rd
man/average_linkage.Rd
man/beta_regress.Rd
man/bootstrap.fit.Rd
man/bootstrap_regress.Rd
man/bumphuntingEngine.Rd
man/bumps-class.Rd
man/clique_merge.Rd
man/clusterMaker.Rd
man/combine.pvalue.Rd
man/complete_linkage.Rd
man/corrclusterMaker.Rd
man/dendro.data.Rd
man/dendrogram.Rd
man/distance_kinds.Rd
man/distributeRef.Rd
man/estDimRMT.Rd
man/gapStat.Rd
man/get.bumps-methods.Rd
man/get450Ksheet.Rd
man/get450Kurl.Rd
man/get450Kzip.Rd
man/getTCGAssemble.Rd
man/hclust_from_data.Rd
man/int.eprior.Rd
man/int_eprior.Rd
man/isvaFn.Rd
man/linkage_kinds.Rd
man/memberDend.Rd
man/memberLimit.Rd
man/midDend.Rd
man/mlm.fit.Rd
man/mlm.tstat.Rd
man/moduleSearch.Rd
man/optimModule.Rd
man/plot.Rd
man/preProcess450K.Rd
man/preProcessDMR.Rd
man/print.Rd
man/pvalue.Rd
man/rankm.Rd
man/regionSeeker.Rd
man/segmentsCluster.Rd
man/segmentsMaker.Rd
man/show-methods.Rd
man/single_linkage.Rd
man/smoother.Rd
man/stouffer_liptak.combp.Rd
man/svaReg.Rd
man/theme_dendro.Rd
man/wilcox.fit.Rd
man/zscore.combp.Rd
src/Makevars
src/RcppExports.cpp
src/Rcpphclust.cpp
src/Rcppsva.cpp
test/testthat.R
