preProcess450K: preProcess450K
In xinchoubiology/Rcppsva: Rcpp Integration Surrogate Variable Analysis
Description
Usage
Arguments
Details
Value
Description
process450K is a function used for our methylation 450K raw data preprocessing.
Usage
1
2
preProcess450K(tcga.dir = ".", cancer = "BRCA", methylate = c("Beta",
"M"), verbose = TRUE)
Arguments
tcga.dir
directionary of TCGA cancer level-1 data
cancer
[ca]ncer [type] for TCGA retrieval
methylate
[me]thylate data value type; 'Beta'(default) and 'M'
verbose
TRUE
Details
utility R function; preProcess450K
Value
list
mset Methylated value matrix after ComBat process
pd pdata for next analysis
xinchoubiology/Rcppsva documentation built on May 4, 2019, 1:06 p.m.
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Description Usage Arguments Details Value
Description
process450K is a function used for our methylation 450K raw data preprocessing.
Usage
1 2 | preProcess450K(tcga.dir = ".", cancer = "BRCA", methylate = c("Beta",
"M"), verbose = TRUE)
|
Arguments
tcga.dir |
directionary of TCGA cancer level-1 data |
cancer |
[ca]ncer [type] for TCGA retrieval |
methylate |
[me]thylate data value type; 'Beta'(default) and 'M' |
verbose |
TRUE |
Details
utility R function; preProcess450K
Value
list mset Methylated value matrix after ComBat process pd pdata for next analysis
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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