preProcessDMR: preProcessDMR

In xinchoubiology/Rcppsva: Rcpp Integration Surrogate Variable Analysis

Description

ultility R differential methylation positions 450K for M value data archive

Usage

preProcessDMR(data = NULL, pdata = NULL, svam = c("isva", "sva"),
  lmfit = c("NULL", "limma"), sampling = c("permutation", "bootstrap"),
  B = 30, verbose = TRUE)

Arguments

data	normalized methylation microarray value matrix (Beta, M)
pdata	phenotype data matrix
svam	surrogate variable analysis method type
lmfit	linear regression analysis
sampling	sampling coefficient type; 'permutation'(default) and 'bootstrap'
B	sampling method's round; 30(default)
verbose	TRUE

Value

list fit mset.fit matrix bg mset.bg list coef each round's coeffcient sigma df.residuals

xinchoubiology/Rcppsva documentation built on May 4, 2019, 1:06 p.m.