Man pages for xpastor/skima
| annotatedCluster | Annotated hierarchical clustering |
| annotatedHeatmap | Annotated heatmaps |
| annotatedPCA | Annotated PCA plots. |
| differentialMethylation | Differential methylation analysis. |
| DMR_detection-methods | Method DMR_detection. |
| genotypeSamples | Sample genotyping. |
| gr2bed | GenomicRanges to BED-like data frame. |
| guessArrayType | Guess array type from list of probes. |
| inspector | Data inspection plotting functions. |
| pca_report | Produces a report with annotated PCA plots. |
| plotBetaDensityHeatmap | Density heatmap |
| plotControlProbes | Control probes plots. |
| plotSampleCorrelation | Plot samples correlation |
| plotSamplesDistribution | Per sample density plot |
| plotSimplifiedQC | Median intensities plot. |
| preprocess | Array correction, filtering and QC. |
| report_DMRs | Report DMR analysis. |
| report_enrichment | Report GO/KEGG analysis. |
| report_significance | Report significant results |
| run | Execution of SKIMA. |
| run_limma | Run limma on a dataset |
