Description Usage Arguments Details Value
Significant results reported as PCA plots and dendrograms
1 2 |
mat |
matrix used to report the results |
fit |
fitLM object from limma |
groups |
a named vector with the classification used to report results |
coef |
a character with the tested condition to be reported |
prefix |
character, the file prefix to report the results |
invisible |
a boolean to determine if the output of 'missMethyl::gometh' is returned |
Extracts the significance analysis from a given variable. Features with an adjusted P-value lower or equal to 0.05 are taken as significant and used to summarize the results with PCA plots and hierarchical clustering.
limma::topTable
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