Man pages for xpastor/skima

annotatedClusterAnnotated hierarchical clustering
annotatedHeatmapAnnotated heatmaps
annotatedPCAAnnotated PCA plots.
differentialMethylationDifferential methylation analysis.
DMR_detection-methodsMethod DMR_detection.
genotypeSamplesSample genotyping.
gr2bedGenomicRanges to BED-like data frame.
guessArrayTypeGuess array type from list of probes.
inspectorData inspection plotting functions.
pca_reportProduces a report with annotated PCA plots.
plotBetaDensityHeatmapDensity heatmap
plotControlProbesControl probes plots.
plotSampleCorrelationPlot samples correlation
plotSamplesDistributionPer sample density plot
plotSimplifiedQCMedian intensities plot.
preprocessArray correction, filtering and QC.
report_DMRsReport DMR analysis.
report_enrichmentReport GO/KEGG analysis.
report_significanceReport significant results
runExecution of SKIMA.
run_limmaRun limma on a dataset
xpastor/skima documentation built on Sept. 6, 2018, 8:41 p.m.