annotatedHeatmap: Annotated heatmaps

Description Usage Arguments

Description

Annotated heatmaps

Usage

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annotatedHeatmap(matrix, ..., column_annotation = NULL,
  row_annotation = NULL, column_names_gp = gpar(fontsize = 7),
  row_names_gp = column_names_gp, row_dend_side = "right",
  row_names_side = "left", heatmap_legend_param = list(color_bar =
  "continuous", legend_height = unit(3, "cm")))

Arguments

matrix

a matrix. Either numeric or character. If it is a simple vector, it will be converted to a one-column matrix.

...

functions which define complex annotations or vectors of simple annotation. Values should be named arguments to be passed to 'Heatmap' function from 'ComplexHeatmap' package.

column_annotation, row_annotation

a data frame. Each column will be treated as a simple annotation. The data frame must have column names.

column_names_gp

graphic parameters for drawing text.

row_names_gp

graphic parameters for drawing text.

row_dend_side

should the row cluster be put on the left or right of the heatmap?

row_names_side

should the row names be put on the left or right of the heatmap?

heatmap_legend_param

a list contains parameters for the heatmap legend. See color_mapping_legend,ColorMapping-method for all available parameters.


xpastor/skima documentation built on May 16, 2019, 3:25 p.m.