run_limma: Run limma on a dataset
In xpastor/skima:
Description
Usage
Arguments
Details
Value
Description
Generation of the fitted model with limma that can be use for any sort of differential analysis, as well as input for DMRcate
Usage
1
Arguments
mat
numeric matrix
targets
data frame with sample annotation
Details
The rows in 'targets' must be ordered like the columns in 'mat'. Before the fitted model is produced, 'targets' is checked for variables with absence of replicates and for colinearity.
All the columns present in the 'targets' file will be included in the linear model.
Value
limma::eBayes
xpastor/skima documentation built on May 16, 2019, 3:25 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Value
Description
Generation of the fitted model with limma that can be use for any sort of differential analysis, as well as input for DMRcate
Usage
1 |
Arguments
mat |
numeric matrix |
targets |
data frame with sample annotation |
Details
The rows in 'targets' must be ordered like the columns in 'mat'. Before the fitted model is produced, 'targets' is checked for variables with absence of replicates and for colinearity.
All the columns present in the 'targets' file will be included in the linear model.
Value
limma::eBayes
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.