batch.analysis.MA: plot the MA plot for two sets of cells

In xu-lab/SINCERA: An R implementation of SINCERA pipeline for processing single-cell RNA-seq data.

Description

plot the MA plot for two sets of cells

Usage

batch.analysis.MA(x, s1.cols, s2.cols, fig.filename = NULL,
  fig.main = "MA plot", fig.res = 150)

Arguments

x	The expression matrix; rows are genes, cells are columns
s1.cols	(numeric) the column indices for the first set of cells
s2.cols	(numeric) the column indices for the second set of cells
fig.filename	(character) the file name of the output figure; if fig.filename is null, the figure will be plotted to the screen
fig.main	(character) the title of the figure
s1.label	(character) the name for the first set of cells
s2.label	(character) the name for the second set of cells
do.log	(logical) log2 transformation of mean expression values of each gene

xu-lab/SINCERA documentation built on Feb. 3, 2021, 4:19 a.m.