getExprQuantiles: Get and plot the quantiles of gene expression per cell

In xu-lab/SINCERA: An R implementation of SINCERA pipeline for processing single-cell RNA-seq data.

Description

Enable analysis of batch difference by calculation and plotting the quantiles of cellular expression profiles Colors indicate cells from different batches

Usage

getExprQuantiles(object, probs = c(0.25, 0.5, 0.75, 0.8, 0.85, 0.9, 0.92,
  0.94, 0.96, 0.98, 0.99, 1), lower.bound = -1, upper.bound = Inf,
  do.plot = T)

Arguments

object	A sincera object
probs	a vector of quantiles to be computed
lower.bound	The minimum value for quantile calculation
upper.bound	The maximum value for quantile calculation
do.plot	If true, visualize the quantiles in individual cells with colors indicating different batches

Value

A data frame containing the quantile values of individual cells

xu-lab/SINCERA documentation built on Feb. 3, 2021, 4:19 a.m.