filterLowQualityCells: pre-filtering low quality cells

In xu-lab/SINCERA: An R implementation of SINCERA pipeline for processing single-cell RNA-seq data.

Description

Pre-filtering low quality cells based on library complexity (i.e., the number of genes expressed in a library)

Usage

filterLowQualityCells(object, min.expression = 1, min.genes = 500,
  do.plot = FALSE, ...)

Arguments

object	A sincera object
min.expression	The threshold value of expressed genes
min.genes	Cells with less than this number of expressed genes will be excluded from downstream analysis
do.plot	If TRUE, plot the distribution of library complexity

Value

An update sincera object with low quality cells pre-filtered

xu-lab/SINCERA documentation built on Feb. 3, 2021, 4:19 a.m.