exprs.test.statistic.metric: Normalized and smoothened results of group specific...

In xu-lab/SINCERA: An R implementation of SINCERA pipeline for processing single-cell RNA-seq data.

Description

Normalized and smoothened results of group specific differential expression test

Usage

exprs.test.statistic.metric(ES, group.by = CLUSTER.LABEL, groups = NULL,
  log.base = 2, test.statistic.metric.prefix = TEST.STATS.METRIC.PREFIX,
  diff.expr.prefix = DIFF.EXPR.PREFIX)

Arguments

ES	(ExpressionSet) an ExpressionSet object containing the single cell RNA-seq data
group.by	(character) the name of the column that contains the cluster information
groups	(character) the clusters for signature prediction
log.base	(numeric) the base of logarithm
test.statistic.metric.prefix	(character) prefix for labeling the columns encoding the results of test statistic metric for each group
diff.expr.prefix	(character) prefix for labeling the columns encoding the results of differential test

Value

an ExpressionSet object containing the results of test statistic metrics in the attributes of fData

xu-lab/SINCERA documentation built on Feb. 3, 2021, 4:19 a.m.