ParseGeneric: Generic parser for a description string.
In y1zhou/brendaDb: The BRENDA Enzyme Database
ParseGeneric R Documentation
Generic parser for a description string.
Description
Descriptions are generally structured as the following:
Protein information is included in '#'...#',
Literature citations are in '<...>',
Commentaries in '(...)', and
field-special information in '...'.
This function separates these fields into different columns.
Usage
ParseGeneric(description, acronym)
Arguments
description
A description string from one of the entries.
acronym
The acronym of the field. Can be found with ShowFields().
Details
The description column contains values extracted by BRENDA in each field.
The fieldInfo column contains different information in different fields:
In a SYNONYMS entry, it is either the source of the identifier, or part
of the description (a false positive).
In KM_VALUE, TURNOVER_NUMBER entries, it's the corresponding substrate.
Value
A tibble with columns: proteinID, description, fieldInfo,
commentary, and refID
y1zhou/brendaDb documentation built on Dec. 12, 2022, 3:43 a.m.
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| ParseGeneric | R Documentation |
Generic parser for a description string.
Description
Descriptions are generally structured as the following:
Protein information is included in '#'...#',
Literature citations are in '<...>',
Commentaries in '(...)', and
field-special information in '...'.
This function separates these fields into different columns.
Usage
ParseGeneric(description, acronym)
Arguments
description |
A description string from one of the entries. |
acronym |
The acronym of the field. Can be found with |
Details
The description column contains values extracted by BRENDA in each field.
The fieldInfo column contains different information in different fields:
In a
SYNONYMSentry, it is either the source of the identifier, or part of the description (a false positive).In
KM_VALUE,TURNOVER_NUMBERentries, it's the corresponding substrate.
Value
A tibble with columns: proteinID, description, fieldInfo,
commentary, and refID
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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