Files in yigbt/multiGSEA
Combining GSEA-based pathway enrichment with multi omics data integration
.Rbuildignore
.github/.gitignore
.github/workflows/coverage.yaml
.github/workflows/lint.yaml
.github/workflows/pr-commands.yaml
.github/workflows/test.yaml
DESCRIPTION
LICENSE.md
NAMESPACE
R/enrichment_functions.R
R/feature_processing.R
R/metabolome.R
R/proteome.R
R/transcriptome.R
R/utility_functions.R
README.md
data/metabolome.rda
data/proteome.rda
data/transcriptome.rda
inst/CITATION
inst/NEWS.Rd
man/archiveDir.Rd
man/archivePath.Rd
man/combinePvalues.Rd
man/extractPvalues.Rd
man/getFeatures.Rd
man/getGeneMapping.Rd
man/getIDMappingDatabase.Rd
man/getMappedFeatures.Rd
man/getMetaboliteIDformats.Rd
man/getMetaboliteMapping.Rd
man/getMultiOmicsFeatures.Rd
man/getOrganisms.Rd
man/initOmicsDataStructure.Rd
man/loadLocal.Rd
man/mapIDType.Rd
man/metabolome.Rd
man/multiGSEA.Rd
man/proteome.Rd
man/rankFeatures.Rd
man/rename_duplicates.Rd
man/transcriptome.Rd
tests/testthat.R
tests/testthat/test_combinePvalues.R
tests/testthat/test_pathway_enrichment.R
tests/testthat/test_pathway_features.R
vignettes/multiGSEA.rmd
vignettes/references.bib
