Man pages for yzeng-lol/meeqtl
The package performs CpG sits methylation dependent eQTL (me_eQTL) analysis
| add_gwas | add_gwas |
| add_siglabel_class | add_siglabel_class |
| add_snp_cpg_gene_pos | add_snp_cpg_gene_pos |
| corr_dotmap | corr_dotmap Dotmap based on correlation coefficients and p... |
| corr_scatter | corr_scatter scatterplot for x and y with correlation and lm... |
| corr_scatter_ci | corr_scatter_ci scatterplot for x and y with correlation and... |
| corr_scatter_hex | corr_scatter_hex Hexagonalfor x and y with correlation and lm... |
| corr_volcano | corr_volcano Volcano plot for correlation coefficients and p... |
| corr_volcano_ylim | corr_volcano_ylim Volcano plot for correlation coefficients... |
| dot-plot_cmb | .plot_cmb |
| find_ctcf_in_prostate | find_ctcf_in_prostate |
| find_reverse_eqtl | find_reverse_eqtl |
| get_histone_signals | Extract histone ChIP-seq signals for probe regions |
| get_ucsc_tracks | get_ucsc_tracks |
| init_cpg_meth | This will filtering CpG methylation matrix and pull out... |
| init_gene_expr | This will filtering expression matrix and pull out... |
| init_snp_geno | This will filtering SNP genotype matrix and pull out... |
| plot_dens_cdf | plot_dens_cdf |
| plot_gwas | plot_gwas |
| plot_me_eQTLs | plot_me_eQTLs |
| run_liftOver_wrapper | run_liftOver_wrapper |
| run_me_eQTL | This will run matrixeQTL for eQTL, meQTL and... |
