plot_me_eQTLs: plot_me_eQTLs
In yzeng-lol/meeqtl: The package performs CpG sits methylation dependent eQTL (me_eQTL) analysis

This function will draw combined plots inclduing me_eQTLs, eQTL and meQTL for snp_cpg_gene combinations list

plot_me_eQTLs(
  snp_cpg_gene,
  file_edata,
  file_gdata,
  file_mdata,
  file_tss_loci,
  file_snp_loci,
  file_res,
  name
)

`snp_cpg_gene`	vector of snp_cpg_gene comination
`file_edata`	path to edata file
`file_gdata`	path to gdata file
`file_mdata`	path to mdata file
`file_tss_loci`	path to TSS bed file
`file_snp_loci`	path to SNP bed file
`file_res`	path to me_eqtl_res.Rdata
`name`	output plot file name prefix

1 2	snp_cpg_gene <- c("rs28520918_chr6:31402506_POU5F1", "rs1039750_chr11:94603277_SESN3") plot_me_eQTLs(snp_cpg_gene, file_edata, file_gdata, file_mdata, file_snp_loci, file_res, "me_eQTLs_test")

yzeng-lol/meeqtl documentation built on Dec. 23, 2021, 9:10 p.m.

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