init_cpg_meth: This will filtering CpG methylation matrix and pull out...

In yzeng-lol/meeqtl: The package performs CpG sits methylation dependent eQTL (me_eQTL) analysis

Description

This will filtering CpG methylation matrix and pull out corresponding CpG and CTCF bed file

Usage

init_cpg_meth(
  file_sample_id,
  file_cpg_meth,
  file_cpg_ctcf,
  meth_l = 0.25,
  meth_h = 0.75,
  name
)

Arguments

file_sample_id	file of sample IDs
file_cpg_meth	file of merged CpG sits methylation
file_cpg_ctcf	file of significant correlated CpG and CTCF
meth_l	cut-off of low methylation level, default 0.25
meth_h	cut-off of high methylation level, default 0.75
name	prefix of output files

yzeng-lol/meeqtl documentation built on Dec. 23, 2021, 9:10 p.m.