find_reverse_eqtl: find_reverse_eqtl

In yzeng-lol/meeqtl: The package performs CpG sits methylation dependent eQTL (me_eQTL) analysis

Description

This will find eQTLs for a subset with a particular methylation probe which showing oppostie direction

Usage

find_reverse_eqtl(
  x,
  file_edata,
  file_gdata,
  file_mdata,
  probeid,
  snpid,
  methylation_status,
  cutAtMedian = T,
  writetable = F
)

Arguments

x	eqtl dataframe, e.g., res$gene
file_edata	path to edata file
file_gdata	path to gdata file
file_mdata	path to mdata file
probeid	string probeid
snpid	string snpid
methylation_status	to calculate eQTLs in either High or Low methylation level of the probeid
cutAtMedian	boolean to indicaite if methylation should be stratified at median, defailt T
writetable	boolean to indicate if track files be saved or not

yzeng-lol/meeqtl documentation built on Dec. 23, 2021, 9:10 p.m.