init_gene_expr: This will filtering expression matrix and pull out...

In yzeng-lol/meeqtl: The package performs CpG sits methylation dependent eQTL (me_eQTL) analysis

Description

This will filtering expression matrix and pull out corresponding gene TSS bed file

Usage

init_gene_expr(
  file_sample_id,
  file_gene_expr,
  file_gene_gtf,
  expr_med = 1,
  name
)

Arguments

file_sample_id	file of sample IDs
file_gene_expr	file of gene expression matrix
file_gene_gtf	file of gene annotation
expr_med	cut-off of median gene expression, default 1
name	prefix of output files

yzeng-lol/meeqtl documentation built on Dec. 23, 2021, 9:10 p.m.