add_snp_cpg_gene_pos: add_snp_cpg_gene_pos
In yzeng-lol/meeqtl: The package performs CpG sits methylation dependent eQTL (me_eQTL) analysis
View source: R/add_snp_cpg_gene_pos.R
Description
This function will add POS information of SNP/ATCA, CpG/CTCF and genes/TSS
And split the res to two parts sign of cor(CpG, CTCF)
Usage
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add_snp_cpg_gene_pos(
file_res,
file_cpg_ctcf,
file_snp_loci,
file_atac_peak,
file_tss_loci,
name
)
Arguments
file_res
path to me_eqtl_res.Rdata
file_cpg_ctcf
file of significant correlated CpG and CTCF
file_snp_loci
path to SNP bed file
file_atac_peak
file of ATAC-seq peaks with SNPs
file_tss_loci
path to TSS bed file
name
prefix of output files
yzeng-lol/meeqtl documentation built on Dec. 23, 2021, 9:10 p.m.
R Package Documentation
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View source: R/add_snp_cpg_gene_pos.R
Description
This function will add POS information of SNP/ATCA, CpG/CTCF and genes/TSS And split the res to two parts sign of cor(CpG, CTCF)
Usage
1 2 3 4 5 6 7 8 | add_snp_cpg_gene_pos(
file_res,
file_cpg_ctcf,
file_snp_loci,
file_atac_peak,
file_tss_loci,
name
)
|
Arguments
file_res |
path to me_eqtl_res.Rdata |
file_cpg_ctcf |
file of significant correlated CpG and CTCF |
file_snp_loci |
path to SNP bed file |
file_atac_peak |
file of ATAC-seq peaks with SNPs |
file_tss_loci |
path to TSS bed file |
name |
prefix of output files |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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