init_snp_geno: This will filtering SNP genotype matrix and pull out...

In yzeng-lol/meeqtl: The package performs CpG sits methylation dependent eQTL (me_eQTL) analysis

Description

This will filtering SNP genotype matrix and pull out corresponding SNP bed file

Usage

init_snp_geno(
  file_sample_id,
  file_snp_gt,
  file_snp_in_atac,
  maf_cut = 0.05,
  name
)

Arguments

file_sample_id	file of sample IDs
file_snp_gt	file of SNP genotype matrix
file_snp_in_atac	bed file of SNPs located in ATAC distal peak region
maf_cut	cut-off of MAF, default 0.05
name	prefix of output files

yzeng-lol/meeqtl documentation built on Dec. 23, 2021, 9:10 p.m.