plot_noncir: plots the groups discovered by lcm_tree on the tree for...

In zhenkewu/lotR: Latent class analysis with Observed Trees in R (lotR)

plots the groups discovered by lcm_tree on the tree for observations.

Description

plots the groups discovered by lcm_tree on the tree for observations.

Usage

plot_noncir(
  x,
  group.text.size = 4,
  group.text.offset = 0.1,
  legend.text.size = 10,
  layout = "rectangular",
  horizontal = FALSE,
  ...
)

Arguments

x	An lcm_tree class object; Output from lcm_tree()
group.text.size	Text size for the group labels
group.text.offset	Offset of the group label from the leaves of the tree
legend.text.size	Text size for legend
layout	Layout for the tree, most likely "rectangular" (the default) or "slanted", but see the layout option of ggtree() for more possibilities
horizontal	If TRUE (the default), the tree will be plotted with the root node at the top and all other nodes below. If FALSE, the tree will be plotted with the root node to the left and all other nodes to the right.
...	Not used.

References

https://guangchuangyu.github.io/ggtree-book/chapter-ggtree.html#tree-annotation-using-data-from-evolutionary-analysis-software

Examples

# See vignette

zhenkewu/lotR documentation built on April 24, 2022, 2:36 a.m.