ziyili20/TOAST: Tools for the analysis of heterogeneous tissues
This package is devoted to analyzing high-throughput data (e.g. gene expression microarray, DNA methylation microarray, RNA-seq) from complex tissues. Current functionalities include 1. detect cell-type specific or cross-cell type differential signals 2. tree-based differential analysis 3. improve variable selection in reference-free deconvolution 4. partial reference-free deconvolution with prior knowledge.
Getting started
Browse package contents
Package details |
|
|---|---|
| Author | Ziyi Li and Weiwei Zhang and Luxiao Chen and Hao Wu |
| Bioconductor views | DNAMethylation DifferentialExpression DifferentialMethylation Epigenetics GeneExpression GeneTarget MethylationArray Microarray |
| Maintainer | Ziyi Li <zli16@mdanderson.org> |
| License | GPL-2 |
| Version | 1.11.2 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
|
