get_hubs_gcn: Get GCN hubs
In almeidasilvaf/BioNERO: Biological Network Reconstruction Omnibus
View source: R/gcn_inference.R
get_hubs_gcn R Documentation
Get GCN hubs
Description
Get GCN hubs
Usage
get_hubs_gcn(exp, net)
Arguments
exp
A gene expression data frame with genes in row names and
samples in column names or a 'SummarizedExperiment' object.
net
List object returned by exp2gcn.
Value
Data frame containing gene IDs, modules and
intramodular connectivity of all hubs.
Author(s)
Fabricio Almeida-Silva
See Also
signedKME
Examples
data(filt.se)
gcn <- exp2gcn(filt.se, SFTpower = 18, cor_method = "pearson")
hubs <- get_hubs_gcn(filt.se, gcn)
almeidasilvaf/BioNERO documentation built on Oct. 9, 2024, 1:49 a.m.
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View source: R/gcn_inference.R
| get_hubs_gcn | R Documentation |
Get GCN hubs
Description
Get GCN hubs
Usage
get_hubs_gcn(exp, net)
Arguments
exp |
A gene expression data frame with genes in row names and samples in column names or a 'SummarizedExperiment' object. |
net |
List object returned by |
Value
Data frame containing gene IDs, modules and intramodular connectivity of all hubs.
Author(s)
Fabricio Almeida-Silva
See Also
signedKME
Examples
data(filt.se)
gcn <- exp2gcn(filt.se, SFTpower = 18, cor_method = "pearson")
hubs <- get_hubs_gcn(filt.se, gcn)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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