shake_fgseaResult: Convert the output of fgsea
In GeneTonic: Enjoy Analyzing And Integrating The Results From Differential Expression Analysis And Functional Enrichment Analysis
Description
Usage
Arguments
Value
See Also
Examples
Description
Convert the output of fgsea for straightforward use in GeneTonic()
Usage
1
shake_fgseaResult(fgsea_output)
Arguments
fgsea_output
A data.frame with the output of fgsea() in fgsea.
Value
A data.frame compatible for use in GeneTonic() as res_enrich
See Also
Other shakers:
shake_davidResult(),
shake_enrichResult(),
shake_enrichrResult(),
shake_gprofilerResult(),
shake_topGOtableResult()
Examples
1
2
data(fgseaRes, package = "GeneTonic")
res_from_fgsea <- shake_fgseaResult(fgseaRes)
GeneTonic documentation built on Nov. 8, 2020, 5:27 p.m.
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Description Usage Arguments Value See Also Examples
Description
Convert the output of fgsea for straightforward use in GeneTonic()
Usage
1 | shake_fgseaResult(fgsea_output)
|
Arguments
fgsea_output |
A data.frame with the output of |
Value
A data.frame compatible for use in GeneTonic() as res_enrich
See Also
Other shakers:
shake_davidResult(),
shake_enrichResult(),
shake_enrichrResult(),
shake_gprofilerResult(),
shake_topGOtableResult()
Examples
1 2 | data(fgseaRes, package = "GeneTonic")
res_from_fgsea <- shake_fgseaResult(fgseaRes)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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