The expression panel represents the original input expression matrix (cells in columns and genes in rows) after the gene filter. Genes are clustered by kmeans with k = 100 (dendrogram on the left) and the heatmap represents the expression levels of the gene cluster centers after log2-scaling.
1 2 3 4 5 | sc3_plot_expression.SingleCellExperiment(object, k, show_pdata)
## S4 method for signature 'SingleCellExperiment'
sc3_plot_expression(object, k,
show_pdata = NULL)
|
object |
an object of 'SingleCellExperiment' class |
k |
number of clusters |
show_pdata |
a vector of colnames of the pData(object) table. Default is NULL. If not NULL will add pData annotations to the columns of the output matrix |
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