FetchData | R Documentation |
Retrieves data (feature expression, PCA scores, metrics, etc.) for a set of cells in a Seurat object
FetchData(object, ...)
## S3 method for class 'DimReduc'
FetchData(object, vars, cells = NULL, ...)
## S3 method for class 'Seurat'
FetchData(
object,
vars,
cells = NULL,
layer = NULL,
clean = TRUE,
slot = deprecated(),
...
)
object |
An object |
... |
Arguments passed to other methods |
vars |
List of all variables to fetch, use keyword “ident” to pull identity classes |
cells |
Cells to collect data for (default is all cells) |
layer |
Layer to pull feature data for |
clean |
Remove cells that are missing data; choose from:
Passing |
slot |
Deprecated in favor of |
A data frame with cells as rows and cellular data as columns
pc1 <- FetchData(object = pbmc_small, vars = 'PC_1')
head(x = pc1)
head(x = FetchData(object = pbmc_small, vars = c('groups', 'ident')))
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