GetTissueCoordinates: Get tissue coordinates

In SeuratObject: Data Structures for Single Cell Data

Get tissue coordinates

Description

Retrieve tissue coordinates from spatial objects.

Usage

GetTissueCoordinates(object, ...)

## S3 method for class 'FOV'
GetTissueCoordinates(object, which = NULL, ...)

## S3 method for class 'Seurat'
GetTissueCoordinates(object, image = NULL, ...)

Arguments

object	An object
...	Arguments passed to other methods
which	Name of segmentation boundary or molecule set to retrieve coordinates for; if NULL, will retrieve coordinates for the default boundary
image	Name of SpatialImage object to get coordinates for; if NULL, will retrieve coordinates for the default image

Details

Spatial classes may have specific implementations; refer to those documentation pages for more details.

Value

A data frame with tissue coordinates

Examples

## Not run: 
GetTissueCoordinates(object, which = "centroids")

## End(Not run)

SeuratObject documentation built on Dec. 12, 2025, 5:06 p.m.