changeImageColoring: Update color scheme for changing to RGB image

View source: R/imageManipulation.R

changeImageColoringR Documentation

Update color scheme for changing to RGB image

Description

Update color scheme for changing to RGB image

Usage

changeImageColoring(overlay, color, dye)

Arguments

overlay

SpatialOverlay object, with 4channel image

color

color to change dye to, hex or color name

dye

which dye to change color, can be from Dye or DisplayName column from fluor(overlay)

Value

SpatialOverlay object with updated fluor data

Examples


muBrain <- readRDS(unzip(system.file("extdata", "muBrainSubset_SpatialOverlay.zip", 
                                    package = "SpatialOmicsOverlay")))

muBrain <- add4ChannelImage(overlay = muBrain, 
                            ometiff = downloadMouseBrainImage(), res = 8)

fluor(muBrain)

muBrain <- changeImageColoring(overlay = muBrain, color = "magenta", 
                               dye = "Cy5")
muBrain <- changeImageColoring(overlay = muBrain, color = "#42f5ef", 
                               dye = "Alexa 488")

fluor(muBrain)


Nanostring-Biostats/SpatialOmicsOverlay documentation built on April 20, 2024, 5:36 a.m.