get_gwas_data: 'get_gwas_data' integrate GWAS summary data with support...

In ollyburren/cupcake: PCA for GWAS

Description

get_gwas_data integrate GWAS summary data with support files

Usage

get_gwas_data(
  trait_manifest_file,
  snp_manifest_file,
  data_dir,
  filter_snps_by_manifest = FALSE
)

Arguments

trait_manifest_file	character vector file path to GWAS manifest file
snp_manifest_file	character vector file path to snp manifest
data_dir	character vector file path to location of GWAS summary stats
filter_snps_by_manifest	boolean - whether to prefilter the by snp manifest. This should be true if you wish to take a subset of SNPs

Value

data.table object

ollyburren/cupcake documentation built on July 30, 2020, 9:58 a.m.