fora: Simple overrepresentation analysis based on hypergeometric...

Description Usage Arguments Value Examples

View source: R/fgseaORA.R

Description

Simple overrepresentation analysis based on hypergeometric test

Usage

1
fora(pathways, genes, universe, minSize = 1, maxSize = Inf)

Arguments

pathways

List of gene sets to check.

genes

Set of query genes

universe

A universe from whiche 'genes' were selected

minSize

Minimal size of a gene set to test. All pathways below the threshold are excluded.

maxSize

Maximal size of a gene set to test. All pathways above the threshold are excluded.

Value

A table with ORA results. Each row corresponds to a tested pathway. The columns are the following:

Examples

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Example output



fgsea documentation built on Nov. 8, 2020, 5:22 p.m.