gmtPathways: Returns a list of pathways from a GMT file.
In fgsea: Fast Gene Set Enrichment Analysis
Description
Usage
Arguments
Value
Examples
Description
Returns a list of pathways from a GMT file.
Usage
1
gmtPathways(gmt.file)
Arguments
gmt.file
Path to a GMT file.
Value
A list of vectors with gene sets.
Examples
1
2
pathways <- gmtPathways(system.file(
"extdata", "mouse.reactome.gmt", package="fgsea"))
Example output
Loading required package: Rcpp
fgsea documentation built on Nov. 8, 2020, 5:22 p.m.
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Description Usage Arguments Value Examples
Description
Returns a list of pathways from a GMT file.
Usage
1 | gmtPathways(gmt.file)
|
Arguments
gmt.file |
Path to a GMT file. |
Value
A list of vectors with gene sets.
Examples
1 2 | pathways <- gmtPathways(system.file(
"extdata", "mouse.reactome.gmt", package="fgsea"))
|
Example output
Loading required package: Rcpp
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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