Description Usage Arguments Details Value Author(s) See Also
View source: R/ScanStatNewComp.R
This is a wrapper function to call the C routines for the scan statistic new candidate segmentation computing from the IGS
1 | ScanStatNewComp(combZCumSum, combXCumSum, combZPoint, combXPoint, p, nTotal, grid.cur, max.win, statistic)
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combZCumSum |
A cumulative sum of the number of case reads |
combXCumSum |
A cumulative sum of the number of reads |
combZPoint |
The number of case reads at the grid points |
combXPoint |
The number of reads at the grid points |
p |
The proportion of case reads in the current region |
nTotal |
The total number of reads in the current region |
grid.cur |
The current grid to be computed on |
max.win |
The maximum inter-window to be considered for new scan |
statistic |
The type of statistic. Can be 'binomial','rabinowitz', 'normal', or 'hybrid' |
The computations are done in C for speed.
Returns a matrix containing the candidate change points from the new scan
Jeremy J. Shen
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