Description Usage Arguments Details Value Author(s) See Also
Randomly spike the smoothed control rate of an NHPP according to the parameters.
1 | nhppSpike(smoothRates, nSpike = 25, cptLenR = 4, cptLenMean = 10, minGain = 1.5, maxGain = 10, minLoss = 0.01, maxLoss = 0.5, pGain = 0.6)
|
smoothRates |
The smoothed rate estimate of the control process |
nSpike |
Number of signal spikes |
cptLenR |
Parameter for signal width (parameter R of negative binomial) |
cptLenMean |
Parameter for signal width (mean width) |
minGain |
Minimal Gain relative CN |
maxGain |
Maximal Gain relative CN |
minLoss |
Minimal Loss relative CN |
maxLoss |
Maximal Loss relative CN |
pGain |
Proportion of signal regions that are CN gain. |
The signal width is randomly generated by negative binomial distribution with the two parameters given. The signal strength are uniformly drawn between the two limits.
spikeMat |
A matrix containing the actual signal spike information |
caseRates |
The rate of the case PP to be simulated after signal spike |
Jeremy J. Shen
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