relCNComp: Compute the Relative Copy Number
In SeqCNVCBS: Scan Statistics for CNV Detection with CBS

Description Usage Arguments Details Value Author(s)

This computes the relative copy number by each of the segment called

1	relCNComp(combX, combZ, tauHatInd, p)

`combX`	The number of reads at each unique read position
`combZ`	The number of case/tumor reads at each unique read position
`tauHatInd`	The index of change points called
`p`	The overall proportion of case reads

The relative CN is defined as the number of case reads divided by the number of control reads in a window, adjusted for overall proportion of case reads (divided by the overall relative CN).

Returns a vector of relative CN for each of the segment between two change points

Jeremy J. Shen

SeqCNVCBS documentation built on May 2, 2019, 6:51 p.m.