Description Usage Arguments Details Value Author(s)
This computes the relative copy number by each of the segment called
1 | relCNComp(combX, combZ, tauHatInd, p)
|
combX |
The number of reads at each unique read position |
combZ |
The number of case/tumor reads at each unique read position |
tauHatInd |
The index of change points called |
p |
The overall proportion of case reads |
The relative CN is defined as the number of case reads divided by the number of control reads in a window, adjusted for overall proportion of case reads (divided by the overall relative CN).
Returns a vector of relative CN for each of the segment between two change points
Jeremy J. Shen
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